Thank you for your submission, an automated scan of your plugin code's revealed the following issues:

### Required

[[1](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/commands/indexVaultCommand.ts#L132)]:Obsidian's configuration directory isn't necessarily `.obsidian`, it can be configured by the user. You can access the configured value from `Vault#configDir`

[[1](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L173)][[2](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L174)][[3](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L192)][[4](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L193)][[5](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L200)][[6](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L201)][[7](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L202)]:You should avoid assigning styles via JavaScript or in HTML and instead move all these styles into CSS so that they are more easily adaptable by themes and snippets.


[[1](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/main.ts#L29)][[2](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/main.ts#L42)][[3](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/main.ts#L51)][[4](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/main.ts#L80)]:The command name should not include the plugin name.



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### Optional

[[1](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/commands/indexVaultCommand.ts#L63)]:Use `app.fileManager.trashFile(file: TAbstractFile)` instead, this will make sure that the file is deleted according to the users preferences.

[[1](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/settings.ts#L236)][[2](https://github.com/Minhao-Zhang/obsidian-mcp-server/blob/c46cb98040f5ccfd4cae31910423ba55ecd2cf09/src/commands/initializeOramaDbCommand.ts#L7)]:Casting to `any` should be avoided as much as possible.



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